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bsdA [2019-09-03 09:21:25]
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bsdA [2019-09-03 09:21:25]

transcriptional activator of the [gene|8A83E44AFE9A1A635C65E6B526690AF7DA201BE1|bsdB]-[gene|FD23F4C2AFCBFE35A79116C5A707FACD454E4180|bsdC]-[gene|868DC9DE1C9C26C780F4CEAA4185640B5B6B781B|bsdD] operon
locus
BSU_03620
pI
5.99
mw
32.83 kDa
protein length
290 aa Sequence Blast
gene length
873 bp Sequence Blast
function
regulation of resistance to salicylic acid
product
transcriptional activator ([SW|LysR family])
essential
no
synonyms
yclA
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.5|Transcription factors/ other]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.10|Resistance against other toxic compounds (nitric oxide, phenolic acids, flavonoids, oxalate)]

    • Gene

    Coordinates
    411,578 412,450

    The protein

    Catalyzed reaction/ biological activity

  • transcriptional activation of the ''[gene|8A83E44AFE9A1A635C65E6B526690AF7DA201BE1|bsdB]-[gene|FD23F4C2AFCBFE35A79116C5A707FACD454E4180|bsdC]-[gene|868DC9DE1C9C26C780F4CEAA4185640B5B6B781B|bsdD]'' operon in response to salicylic acid

    • Protein family

  • [SW|LysR family] (according to UniProt)

    • Structure

  • [PDB|2H99] (from Acinetobacter baylyi, 29% identity) [pubmed|19400783]

    • Biological materials

    Mutant

  • MGNA-C060 (yclA::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2058 NBRP B. subtilis, Japan]
  • BKE03620 ([gene|28D03575FA24525C162E6C161631034568E89622|bsdA]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE03620 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAAAGAAAGCGCCTCCTTA, downstream forward: _UP4_TAAAAGATTTTGTCTTATGA
  • BKK03620 ([gene|28D03575FA24525C162E6C161631034568E89622|bsdA]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK03620 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAAAGAAAGCGCCTCCTTA, downstream forward: _UP4_TAAAAGATTTTGTCTTATGA

    • References

  • 17295427,19400783